/*
 * nvbio
 * Copyright (c) 2011-2014, NVIDIA CORPORATION. All rights reserved.
 * 
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 * modification, are permitted provided that the following conditions are met:
 *    * Redistributions of source code must retain the above copyright
 *      notice, this list of conditions and the following disclaimer.
 *    * Redistributions in binary form must reproduce the above copyright
 *      notice, this list of conditions and the following disclaimer in the
 *      documentation and/or other materials provided with the distribution.
 *    * Neither the name of the NVIDIA CORPORATION nor the
 *      names of its contributors may be used to endorse or promote products
 *      derived from this software without specific prior written permission.
 * 
 * THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS" AND
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 * WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE ARE
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 */

#pragma once

#include <nvbio/strings/alphabet.h>

namespace nvbio {
namespace io {

///@addtogroup IO
///@{

///@addtogroup SequenceIO
///@{

template <Alphabet         SEQUENCE_ALPHABET>
struct SequenceDataTraits
{
    static const uint32 SEQUENCE_BITS             = AlphabetTraits<SEQUENCE_ALPHABET>::SYMBOL_SIZE;     ///< symbol size for reads
    static const bool   SEQUENCE_BIG_ENDIAN       = true;                                                       ///< big endian?
    static const uint32 SEQUENCE_SYMBOLS_PER_WORD = (8*sizeof(uint32))/SEQUENCE_BITS;                           ///< symbols per word
};

///@} // SequenceIO
///@} // IO

} // namespace io
} // namespace nvbio
